Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2005


R.S. MacLeod. “Mechanisms of ischemia-induced ST-segment changes,” In Journal of Electrocardiology, Vol. 38, No. 4 , Elsevier, pp. 8--13. Oct, 2005.
DOI: 10.1016/j.jelectrocard.2005.06.095



R.S. MacLeod, F. Kornreich, A. van Oosterom, P. Rautaharju, R. Selvester, G. Wagner, C. Zywietz. “Report of the First Virtual Visualization of the Reconstructed Electrocardiographic Display Symposium,” In Journal of Electrocardiology, Vol. 38, pp. 385--399. 2005.



Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod. “Bayesian Solutions and Performance Analysis in Bioelectric Inverse Problems,” In IEEE Trans Biomed. Eng., Vol. 52, No. 6, pp. 1009--1020. June, 2005.



J.G. Stinstra, D.M. Weinstein, B. Hopenfeld, C.S. Henriquez, R.S. MacLeod. “Software Challenges in the New Field of Integrated Cardiac Models,” In Proceedings of The Joint Meeting of The 5th International Conference on Bioelectromagnetism and The 5th International Symposium on Noninvasive Functional Source Imaging within the Human Brain and Heart, Vol. 7, pp. 195--198. 2005.



J.G. Stinstra, B. Hopenfeld, R.S. MacLeod. “On the Passive Cardiac Conductivity,” In Annal. Biomed. Eng., Vol. 33, No. 12, pp. 1743--1751. 2005.



J.G. Stinstra, S. Shome, B. Hopenfeld, R.S. MacLeod. “Modelling Passive Cardiac Conductivity During Ischaemia,” In Med. Biol. Eng. Comput., Vol. 43, No. 6, pp. 776--782. 2005.



B. Yilmaz, R.S. MacLeod, B.B. Punske, B. Taccardi, D.H. Brooks. “Training Set Selection for Statistical Estimation of Epicardial Activation Mapping from Intravenous Multielectrode Catheters,” In IEEE Trans Biomed. Eng., pp. (in press). 2005.



B. Yilmaz, R.S. MacLeod, B.B. Punske, B. Taccardi, D.H. Brooks. “Venous Catheter Based Mapping of Ectopic Epicardial Activation: Training Data Set Selection for Statistical Estimation,” In IEEE Trans Biomed Eng, Vol. 52, No. 11, pp. 1823--1831. November, 2005.


2004


D.H. Brooks, A. Ghodrati, Y. Zhang, G. Tadmor, R.S. MacLeod. “Inverse Electrocardiography in the Framework of Dynamic Imaging Problems,” In Proceedings of the IEEE Engineering in Medicine and Biology Society 26th Annual International Conference, San Francisco, CA, pp. 3565--3568. September, 2004.



A. Ghodrati, D.H. Brooks, R.S. MacLeod. “On Selecting and Using Reduced Sets of Leads for Electrocardiographic Imaging Using Reconstruction-Quality Criteria,” In Proceedings of The SIAM Conference on Imaging Science 2004, Salt Lake City, UT, Note: abstract., May, 2004.



A. Ghodrati, F. Calderero, D.H. Brooks, G. Tadmor, R.S. MacLeod. “A Level Sets Algorithm for the Inverse Problem of Electrocardiography,” In Proceedings of the Asilomar Conf. on Sig. and Sys., Vol. 2, pp. 1590--1594. November, 2004.



B. Hopenfeld, J.G. Stinstra, R.S. MacLeod. “Mechanism for ST Depression Associated with Contiguous Subendocardial Ischemia,” In J. Cardiovasc. Electrophysiol., Vol. 15, No. 10, pp. 1200--1206. 2004.



C.R. Johnson, R.S. MacLeod, S.G. Parker, D.M. Weinstein. “Biomedical Computing and Visualization Software Environments,” In Comm. ACM, Vol. 47, No. 11, pp. 64--71. 2004.



R.S. Macleod, D.M. Weinstein, J.D. de St. Germain, D.H. Brooks, C.R. Johnson, S.G. Parker. “SCIRun/BioPSE: Integrated Problem Solving Environment for Bioelectric Field Problems and Visualization,” In Proceedings of the Int. Symp. on Biomed. Imag., Arlington, Va, pp. 640--643. April, 2004.



C.H. Wolters, A. Anwander, B. Maess, R.S. MacLeod, A.D. Friederici. “The Influence of Volume Conduction Effects on the EEG/MEG Reconstruction of the Sources of the Early Left Anterior Negativity,” In Proceedings of the IEEE Engineering in Medicine and Biology Society 26th Annual International Conference, San Francisco, CA, Vol. 5, pp. 3569--3572. September, 2004.


2003


A. Corlan, R.S. MacLeod, L.D. Ambroggi. “Low Variability of Autocorrelation Maps with Intrathoracic Heart Position,” In Int. J. Bioelectromag., Vol. 5, No. 1, pp. 139--140. 2003.



Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod. “Prior Model Selection for Bayesian Inverse Electrocardiography,” In Proceedings of the NFSI Conference 2003, Chieti, Italy, 2003.



Y. Serinagaoglu, R.S. MacLeod, D.H. Brooks. “A Bayesian Approach to Inclusion and Performance Analysis of Using Extra Information in Bioelectric Inverse Problems,” In Proceedings of the IEEE International Conference on Image Processing, 2003.



Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod. “Combining Numerical and Physiological Constraints in Inverse Electrocardiography,” In Int. J. Bioelectromag., Vol. 5, No. 1, pp. 215--217. 2003.



J.G. Stinstra, B. Hopenfeld, R.S. MacLeod. “A Model for the Passive Cardiac Conductivity,” In Int. J. Bioelectromag., Vol. 5, No. 1, pp. 185--186. 2003.