AtlasWerks is an open-source (BSD license) software package for medical image atlas generation. Such atlases are a widely-used tool for image segmentation, and deformations generated using these techniques are used for statistical analysis of brain shape to identify patterns of change related to disease progression. The AtlasWerks software package provides efficient CPU and GPU implementations of nonlinear deformation algorithms based on the Large Deformation Diffeomorphic Metric Mapping (LDMM) framework for single machines and clusters, command line frontends for atlas and deformation generation, and a number of utility programs for handling 3D medical image data.

Please use the following acknowledgment and send us references to any publications, presentations, or successful funding applications that make use of the software. "This work was made possible in part by NIH/NIBIB Grant 5R01EB007688 and NIH/NIGMS Grant P41GM103545."

• AtlasWerks Citation: [bibtex citation] [Endnote citation]

User Guide

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