Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2006


 C.D. Carbonera, J.F. Shepherd. “On the Existence of a Perfect Matching for 4-regular Graphs derived from Quadrilateral Meshes,” SCI Institute Technical Report, No. UUSCI-2006-021, University of Utah, 2006.


C.D. Carbonera, J.F. Shepherd. “A Constructive Approach to Constrained Hexahedral Mesh Generation,” In Proceedings of the 15th International Meshing Roundtable, Birmingham, AL, September, 2006.


C.J. Cascio, M. Styner, R.G. Smith, M.D. Poe, G. Gerig, H.C. Hazlett, M. Jomier, R. Bammer, J. Piven. “Tractography-Based Segmentation of the Corpus Callosum Reveals a Reduced Relationship to Cortical White Matter Volume in Young Children with Developmental Delay,” In Am J Psychiatry, Vol. 163, pp. 2157--2163. December, 2006.


C.J. Cascio, G. Gerig, J. Piven. “Diffusion Tensor Imaging: Application to the Study of the Developing Brain,” In Journal of the American Academy of Child and Adolescent Psychiatry JAACAP, August, 2006.


J. Cates, M.D. Meyer, P.T. Fletcher, R.T. Witaker. “Entropy-Based Particle Systems for Shape Correspondence,” In Workshop on Mathematical Foundations of Computational Anatomy, MICCAI 2006, pp. 90--99. October, 2006.


J. Cates, D. Weinsten, M. Davis. “The Center for Integrative Biomedical Computing: Advancing Biomedical Science with Open Source,” In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI) 2006, 2006.


I. Corouge, P.T. Fletcher, S. Joshi, S. Gouttard, G. Gerig. “Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis,” In Medical Image Analysis, Vol. 10, No. 5, pp. 786--798. 2006.


A. Dietrich, I. Wald, H. Schmidt, K. Sons, P. Slusallek. “Realtime Ray Tracing for Advanced Visualization in the Aerospace Industry,” In Proceedings of the 5th Paderborner Workshop Augmented and Virtual Reality in der Produktentstehung, 2006.


S.E. Dillard, V. Natarajan, G.H. Weber, V. Pascucci, B. Hamann. “Tessellation of Quadratic Elements,” In ISAAC, pp. 722--731. 2006.


S. Dong, P.-T. Bremer, M. Garland, V. Pascucci, J.C. Hart. “Spectral Surface Quadrangulation,” In ACM Transactions on graphics: ACM SIGGRAPH 2006 Papers, Boston, Massachusetts, ACM Press, New York, NY, USA pp. 1057--1066. 2006.
ISBN: 1-59593-364-6


C.C. Douglas, J.C. Harris, M. Iskandarani, C.R. Johnson, R.J. Lodder, S.G. Parker, M.J. Cole, R. Ewing, Y. Efendiev, R. Lazarov, G. Qin. “Dynamic Contaminant Identification in Water,” In Proceedings of Computational Science - ICCS 2006: 6th International Conference, Part III, Reading, UK, May 28-31, 2006, Lecture Notes in Computer Science series, Vol. 3993, Edited by Vassil N. Alexandrov and Geert Dick van Albada and Peter M.A. Sloot and Jack J. Dongarra, Springer-Verlag Heidelberg, pp. 393--400. 2006.


H. Edelsbrunner, D. Morozov, V. Pascucci. “Persistence-based Simplification of Real-Valued Functions on 2-Manifolds,” In Proceedings of the 22nd International Annual Symposium on Computational Geometry, Note: To appear, pp. 212--220. 2006.


E. Eide, L. Stoller, T. Stack, J. Freire, J. Lepreau. “Integrated Scientific Workflow Management for the Emulab Network Testbed,” In Proceedings of the 2006 USENIX Annual Technical Conference, pp. 33. 2006.


B.J. Ellis, R.E. Debski, S.M. Moore, P.J. McMahon, J.A. Weiss. “Methodology and Sensitivity Studies for Finite Element Modeling of the Inferior Glenohumeral Ligament Complex,” In J. Biomech., Vol. 40, No. 3, pp. 603--612. January, 2006.


B.J. Ellis, T.J. Lujan, M.S. Dalton, J.A. Weiss. “MCL Insertion Site and Contact Forces in the ACL-Deficient Knee,” In Journal of Orthopaedic Research, Vol. 24, No. 4, Elsevier, pp. 800--810. 2006.


P.T. Fletcher, S.M. Pizer, S. Joshi. “Shape Variation of Medial Axis Representations via Principal Geodesic Analysis on Symmetric Spaces,” In Statistics and Analysis of Shapes, Springer, pp. 29--59. 2006.
DOI: 10.1007/0-8176-4481-4_2


P.T. Fletcher, R.T. Whitaker. “Riemannian Metrics on the Space of Solid Shapes,” In MICCAI Workshop on Mathematical Foundations of Computational Anatomy, October, 2006.


J. Freire, C.T. Silva, S.P. Callahan, E. Santos, C.E. Scheidegger, H.T. Vo. “Managing Rapidly-Evolving Scientific Workflows,” In Provenance and Annotation of Data, In Proceedings of The 2006 International Provenance and Annotation Workshop, Lecture Notes in Computer Science (LNCS), pp. 10--18. 2006.


G. Gerig, B. Davis, P. Lorenzen, S. Xu, M. Jomier, J. Piven, S. Joshi. “Computational Anatomy to Assess Longitudinal Trajectory of Brain Growth,” In Proceedings of The Third International Symposium on 3D Data Processing, Visualization, and Transmission, pp. 1041--1047. June, 2006.


G. Gerig, S. Joshi, P.T. Fletcher, K. Gorczowski, S. Xu, S.M. Pizer, M. Styner. “Statistics of Populations of Images and its Embedded Objects: Driving Applications in Neuroimaging,” In Proceedings of IEEE International Symposium on Biomedical Imaging (ISBI), pp. 1120--1123. April, 2006.